PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000710285
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 623aa    MW: 69617.1 Da    PI: 7.6583
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000710285genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.12.4e-11318364455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +h e+Er+RR+++N++f  Lr+++P+       K++ ++ L  Av YI++L+
  MDP0000710285 318 NHVEAERQRREKLNHRFYVLRSVVPNV-----SKMDRSSLLADAVAYINQLK 364
                    799***********************6.....5*****************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.2E-4022219IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000832.34E-13312368No hitNo description
SuperFamilySSF474594.71E-17312380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.037314363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-9318363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16318379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.3E-15320369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 623 aa     Download sequence    Send to blast
MEEIISSCSP PNFCQETSSK FQQSLQFIIQ NRPEWWVYSI FWQASKDSIS DQVSLSWAAG  60
HFQDTRDHLA SKRSNRVTNS YQPKFGFNNV GRKKMINREV EALLHDDMVD LDMRLVDQGD  120
VTDTEWFYFY TVSLTQSFSA SHGNNSDNIL GRAFGSGGFV WLAADHEFQF YECERVKEAR  180
MHGIQTLVCI ATPCGVLELA SLDVIKEDWG LVQLSKSLFG SDGNINKTLS QQTNHDGNVI  240
APILENGLFS AAQKELTRQD RGGINEAAPI NLGRSSPESP SDSVDNFTSE NTESMTRTKK  300
RGRSSNHGSA SRESQLLNHV EAERQRREKL NHRFYVLRSV VPNVSKMDRS SLLADAVAYI  360
NQLKSKVEEL EAKVQEQPQK PKAGNNASNS LDHHSGQSTS SKVEQRHCSN NNDGNIINSN  420
NNNNNNINSD RGAAAVVEVD VKILGSEAII HVQCPDQGYP YAKLMNALKG LGLQVYHASI  480
SSVKELMIQD VVARLPYGFT GEEALRNGIR CCLLEPYSPI DNDLFDCLLD SFLLLVFNKI  540
GDLKTLGRRC VVLCGGERLX TMWXSSDPIX STAGPTRTIF VCREMTCGGR NTSRHSRPRR  600
RXVCLISSRF RPKNLGKTRD RT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yz6_A6e-21112192192Transcription factor MYC3
4rs9_A6e-21112192192Transcription factor MYC3
4rqw_B6e-21112192192Transcription factor MYC3
4rqw_A6e-21112192192Transcription factor MYC3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.269350.0fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008356558.10.0PREDICTED: transcription factor MYC2-like
TrEMBLM5W8H30.0M5W8H3_PRUPE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.12e-55bHLH family protein